public class TraceAlignmentWithGuideTreeUI extends java.lang.Object implements TraceAlignmentWithGuideTreeSettingsListener
Constructor and Description |
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TraceAlignmentWithGuideTreeUI(org.processmining.contexts.uitopia.UIPluginContext context) |
Modifier and Type | Method and Description |
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TraceAlignmentWithGuideTreeInput |
getInput() |
TraceAlignmentWithGuideTreeInput |
readInput() |
void |
setAlignmentAlgorithm(AlignmentAlgorithm alignmentAlgorithm) |
void |
setIncrementLikeSubstitutionScoreValue(int incrementLikeSubstitutionScoreValue) |
void |
setIndelScoreFileName(java.lang.String indelScoreFileName) |
void |
setIndelScoreScaleValue(float indelScoreScaleValue) |
void |
setIsDeriveSubstitutionIndelScores(boolean isDeriveSubstitutionIndelScores) |
void |
setIsGapPenalty(boolean isGapPenalty) |
void |
setIsIncrementLikeSubstitutionScores(boolean isIncrementLikeSubstitutionScores) |
void |
setIsPerformRealignment(boolean isPerformRealignment) |
void |
setIsScaleIndelScores(boolean isScaleIndelScores) |
void |
setRealignmentStrategy(RealignmentStrategy realignmentStrategy) |
void |
setScoringMatrix(ScoringMatrix scoringMatrix) |
void |
setSubstitutionScoreFileName(java.lang.String substitutionScoreFileName) |
public TraceAlignmentWithGuideTreeUI(org.processmining.contexts.uitopia.UIPluginContext context)
public TraceAlignmentWithGuideTreeInput readInput()
public void setIsDeriveSubstitutionIndelScores(boolean isDeriveSubstitutionIndelScores)
setIsDeriveSubstitutionIndelScores
in interface TraceAlignmentWithGuideTreeSettingsListener
public void setSubstitutionScoreFileName(java.lang.String substitutionScoreFileName)
setSubstitutionScoreFileName
in interface TraceAlignmentWithGuideTreeSettingsListener
public void setIndelScoreFileName(java.lang.String indelScoreFileName)
setIndelScoreFileName
in interface TraceAlignmentWithGuideTreeSettingsListener
public void setAlignmentAlgorithm(AlignmentAlgorithm alignmentAlgorithm)
setAlignmentAlgorithm
in interface TraceAlignmentWithGuideTreeSettingsListener
public void setScoringMatrix(ScoringMatrix scoringMatrix)
setScoringMatrix
in interface TraceAlignmentWithGuideTreeSettingsListener
public void setIsIncrementLikeSubstitutionScores(boolean isIncrementLikeSubstitutionScores)
setIsIncrementLikeSubstitutionScores
in interface TraceAlignmentWithGuideTreeSettingsListener
public void setIsGapPenalty(boolean isGapPenalty)
setIsGapPenalty
in interface TraceAlignmentWithGuideTreeSettingsListener
public TraceAlignmentWithGuideTreeInput getInput()
public void setIncrementLikeSubstitutionScoreValue(int incrementLikeSubstitutionScoreValue)
setIncrementLikeSubstitutionScoreValue
in interface TraceAlignmentWithGuideTreeSettingsListener
public void setIsScaleIndelScores(boolean isScaleIndelScores)
setIsScaleIndelScores
in interface TraceAlignmentWithGuideTreeSettingsListener
public void setIndelScoreScaleValue(float indelScoreScaleValue)
setIndelScoreScaleValue
in interface TraceAlignmentWithGuideTreeSettingsListener
public void setIsPerformRealignment(boolean isPerformRealignment)
setIsPerformRealignment
in interface TraceAlignmentWithGuideTreeSettingsListener
public void setRealignmentStrategy(RealignmentStrategy realignmentStrategy)
setRealignmentStrategy
in interface TraceAlignmentWithGuideTreeSettingsListener