All Methods Instance Methods Concrete Methods
Modifier and Type |
Method and Description |
void |
addListener(DisplayPropertiesListener listener) |
void |
alignmentNameChanged(Alignment alignment) |
void |
alignmentSeqActivityChanged(Alignment alignment,
Sequence sequence) |
void |
alignmentSeqDeleted(Alignment alignment,
int i,
Sequence sequence) |
void |
alignmentSeqSwapped(Alignment alignment,
int i,
int j) |
void |
clearHighlights() |
void |
clearSelections() |
void |
fireActivityBackGroundChanged() |
void |
fireDisplayHighlightsChanged(Sequence s) |
void |
fireDisplayHighlightsChanged(Sequence[] s) |
void |
fireSeqSelect(Sequence sequence) |
int |
getActivityHeight() |
int |
getActivityWidth() |
Alignment |
getAlignment() |
Sequence[] |
getAllSelectedSequences() |
Sequence[] |
getAllSelectedSequences(boolean inViewOrder) |
int |
getCursorColumn() |
int |
getCursorRow() |
java.util.Map<java.lang.String,java.awt.Color> |
getEncodedActivityColorMap() |
int |
getEncodingLength() |
java.awt.Font |
getFont() |
java.awt.FontMetrics |
getFontMetrics() |
int |
getFontXOffset() |
int |
getFontYOffset() |
int[] |
getHighlights(Sequence sequence) |
int |
getNoSelectedSequences() |
int |
getPrevCursorColumn() |
int |
getPrevCursorRow() |
int |
getSpacingWidth() |
int |
getXForColumn(int column) |
java.awt.Color |
inverseRGB(java.awt.Color c) |
boolean |
isActivityBackgroundSquare() |
boolean |
isAlignmentBlockShifted() |
boolean |
isAlignmentConcurrentRefined() |
boolean |
isAlignmentRecentlyEdited() |
boolean |
isDisplayConcurrentActivities() |
boolean |
isDisplayConcurrentActivitiesAcrossAllTraces() |
boolean |
isEncodedActivityRendered() |
boolean |
isGapRendered() |
boolean |
isGroupEditing() |
boolean |
isMapping() |
boolean |
isRulerEditing() |
boolean |
isSeqAnnEditing() |
boolean |
isSeqHighlight(Sequence s,
int idx) |
boolean |
isSequenceHidden(int row) |
boolean |
isSequenceSelected(Sequence s) |
void |
removeListener(DisplayPropertiesListener listener) |
void |
sequenceActivityChanged(Sequence sequence) |
void |
sequenceAnnotationChanged(Sequence sequence) |
void |
sequenceColorChanged(Sequence sequence) |
void |
sequenceLineAnnotationsChanged(Sequence aaseq) |
void |
sequenceNameChanged(Sequence sequence,
java.lang.String oldName) |
void |
sequenceNameColorChanged(java.awt.Color color) |
void |
setActivityBackgroundSquare(boolean activityBackgroundSquare) |
void |
setAlignmentRecentlyEdited(boolean isAlignmentRecentlyEdited) |
void |
setCursorHidden(boolean b) |
void |
setIsAlignmentBlockShifted(boolean isAlignmentBlockShifted) |
void |
setIsAlignmentConcurrentRefined(boolean isAlignmentConcurrentRefined) |
void |
setIsDisplayConcurrentActivities(boolean isDisplayConcurrentActivities) |
void |
setIsDisplayConcurrentActivitiesAcrossAllTraces(boolean isDisplayConcurrentActivitiesAcrossAllTraces) |
void |
setIsSequenceSelected(Sequence sequence,
boolean isSelected) |
void |
setRenderEncodedActivity(boolean showEncodedActivity) |
void |
setRenderGaps(boolean renderGaps) |
void |
setRulerEditing(boolean isRulerEditing) |
void |
setSeqAnnEditing(boolean b) |
void |
setSeqHidden(Sequence s,
boolean hidden) |
void |
setSeqHighlight(Sequence s,
int idx,
boolean highlight) |
void |
setSeqHighlight(Sequence s,
int idx,
boolean highlight,
boolean notify) |
int |
sign(int a) |
void |
updateCursor(int newCursorRow,
int newCursorColumn) |
void |
updateCursor(int newCursorRow,
int newCursorColumn,
boolean isShiftDown,
boolean isControlDown) |
void |
updateCursor(int newCursorRow,
int newCursorColumn,
java.awt.event.MouseEvent e) |